PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010405m
Common NameEUTSA_v10010405mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 424aa    MW: 46874.9 Da    PI: 5.8754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010405mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.2e-12118140426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C f++rtG Ck+G++CkF+H+
  Thhalv10010405m 118 EDCAFYMRTGSCKFGSSCKFNHP 140
                      78********************9 PP

2zf-CCCH29.99.3e-10169188625
                      -SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                      C++++rtG CkyG++C+F+H
  Thhalv10010405m 169 CKYYFRTGGCKYGETCRFNH 188
                      ******************** PP

3zf-CCCH38.81.6e-12212235326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + +C++++r+G Ck+G+ CkF+H+
  Thhalv10010405m 212 EIECPYYMRNGSCKFGADCKFNHP 235
                      568********************9 PP

4zf-CCCH201.2e-06352377227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG Ck+  +Ck++H++
  Thhalv10010405m 352 DQPECSYYLKTGDCKFKFKCKYHHPK 377
                      689*********************96 PP

5zf-CCCH33.76.3e-11401422526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C +++r+G+Ck+G+ C+F H+
  Thhalv10010405m 401 ICTHYSRYGICKFGPACRFDHS 422
                      8********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-5114141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6117143IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10118140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089119142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5120139IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-4163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676163191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5165191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5169189IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-7169188IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6209236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544209237IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10212235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5213237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4215234IPR000571Zinc finger, CCCH-type
SMARTSM003560.45350377IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122350378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-5354380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5395422IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4396423IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.239396423IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4401422IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8401422IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MVNSERISGS VADGFEPEPA SRSSSSADRS PSDLNLLTKL IEAFDNVGFG EVAKDQSGTV  60
MSVSEGNGGV DSKAVDGNQE EEEGGRDADG DGDGESESES ENMVEKREVV YPVRPWAEDC  120
AFYMRTGSCK FGSSCKFNHP LPNPRKIQIA RDKVTEKEED ADNLRLMDCK YYFRTGGCKY  180
GETCRFNHTK PKSCLPSVPE LNFLGLPIRP GEIECPYYMR NGSCKFGADC KFNHPDPTTN  240
GGTDSPSFHG NNGGSIGSFS PKSTLQASSA PWSSQRHANG TTPFIPSMLS QSRGVPSQTP  300
EWNGYQASVY SSERNVFSPS NTYLMNNSSA ETSIFSQYQY QMPAEEFPER PDQPECSYYL  360
KTGDCKFKFK CKYHHPKNRL PKQPPYALND KGLPLRPDQI ICTHYSRYGI CKFGPACRFD  420
HSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331390.0BT033139.1 Arabidopsis thaliana unknown protein (At3g48440) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404259.10.0hypothetical protein EUTSA_v10010405mg
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLV4LT870.0V4LT87_EUTSA; Uncharacterized protein
STRINGscaffold_501792.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.10.0C3H family protein